Photosynthesis

Photosynthesis is the process by which plants, algae, and cyanobacteria convert sunlight, water, and carbon dioxide into glucose and oxygen. It is the entry point for solar energy into the biosphere. Without photosynthesis there is no food chain, no atmospheric oxygen, no fossil fuels. This study note walks through the equation, the two stages (light reactions and Calvin cycle), the role of chlorophyll and the photosystems, what controls the rate, and the variations across C3, C4, and CAM plants.

The Net Equation of Photosynthesis

The simplest summary of photosynthesis fits in one line:

$$ 6\,CO_2 + 6\,H_2O + \text{light energy} \;\longrightarrow\; C_6H_{12}O_6 + 6\,O_2 $$

Six molecules of carbon dioxide and six of water, driven by light, produce one molecule of glucose and six of oxygen. Written that way it looks like a single chemical reaction. In reality it is the integrated output of dozens of enzymatic steps in two distinct stages. The two stages can be separated cleanly, even spatially: the light reactions happen in the thylakoid membrane, the Calvin cycle happens in the surrounding stroma.

Stage 1: The Light Reactions

The light reactions take place in the thylakoid membrane of the chloroplast. Their job is to capture photon energy, split water, release oxygen, and produce two energy-carrying molecules (ATP and NADPH) that the Calvin cycle will use in stage 2.

Photosystem II (PSII)

PSII is named in reverse order of discovery, not function. It is actually the first step. A photon excites a chlorophyll-a molecule at the reaction center called P680. The excited electron is captured by an electron transport chain. To replace the lost electron, PSII splits water: \( 2\,H_2O \longrightarrow 4\,H^+ + O_2 + 4\,e^- \). This is where atmospheric oxygen comes from. Every breath you take traces back to PSII somewhere on Earth, mostly in the oceans.

Electron Transport Chain and ATP Synthase

The excited electron moves down an electron transport chain, releasing energy that pumps protons into the thylakoid lumen. The resulting proton gradient drives ATP synthase, which produces ATP. The mechanism is identical in principle to oxidative phosphorylation in the mitochondria — life uses the same trick everywhere.

Photosystem I (PSI)

A second photon excites a chlorophyll molecule at PSI (reaction center P700). The high-energy electron from PSI reduces NADP+ to NADPH. The light reactions therefore yield three products: O₂ (released as a byproduct), ATP, and NADPH. NADPH and ATP both move into the stroma for use in stage 2.

Stage 2: The Calvin Cycle

The Calvin cycle (also called the light-independent reactions or the C3 pathway) takes place in the stroma. It does not directly require light, but it depends on the ATP and NADPH produced by the light reactions. The cycle fixes CO₂ into sugar in three phases.

1. Carbon fixation. The enzyme RuBisCO attaches a CO₂ molecule to a 5-carbon sugar (ribulose-1,5-bisphosphate, or RuBP). The unstable 6-carbon product immediately splits into two 3-carbon molecules of 3-phosphoglycerate (3-PGA). RuBisCO is the most abundant protein on Earth, but it is also notoriously inefficient and slow.
2. Reduction. Each 3-PGA is phosphorylated by ATP and then reduced by NADPH to glyceraldehyde-3-phosphate (G3P), a 3-carbon sugar. For every three CO₂ molecules entering the cycle, six G3P are produced. Five of those six G3P regenerate RuBP; one exits to build glucose, sucrose, or starch.
3. Regeneration. The remaining five G3P molecules pass through a series of rearrangements that consume more ATP and regenerate three RuBP, ready for the next CO₂.

Stoichiometry: producing one glucose molecule (C₆H₁₂O₆) requires six turns of the Calvin cycle, 18 ATP, and 12 NADPH. All of that comes from the light reactions running in parallel in the thylakoid.

Chlorophyll and the Other Pigments

Chlorophyll a is the primary pigment of photosynthesis in plants and cyanobacteria. It absorbs strongly in the blue (around 430 nm) and red (around 662 nm) regions of the spectrum and weakly in the green, which is why leaves look green: green light is reflected rather than absorbed.

Chlorophyll a is not the only pigment present. Chlorophyll b broadens the absorption range and passes its captured energy to chlorophyll a. Carotenoids (the orange and yellow pigments that show up when chlorophyll degrades in autumn) absorb in the blue-green and also protect the plant from oxidative damage. Different algae use additional accessory pigments such as phycobilins to capture wavelengths that chlorophyll a misses.

Factors That Affect the Rate of Photosynthesis

• Light intensity. Up to a saturation point, photosynthesis rate increases roughly linearly with light intensity. Above saturation, other factors become limiting.
• CO₂ concentration. Doubling atmospheric CO₂ in greenhouse experiments roughly doubles the photosynthesis rate in C3 plants until other factors saturate.
• Temperature. Photosynthesis enzymes (especially RuBisCO) have an optimum around 25-35°C in temperate plants. Above that, the enzyme denatures and the rate falls sharply.
• Water availability. Drought-stressed plants close their stomata to conserve water, which simultaneously shuts off CO₂ intake.
• Chlorophyll content. Nitrogen-deficient or iron-deficient plants produce less chlorophyll and photosynthesize more slowly. Crop yields scale heavily with leaf nitrogen status.

C3, C4, and CAM Plants

Different plants have evolved different strategies for handling the inefficiency of RuBisCO, which can wastefully bind oxygen instead of CO₂ in a process called photorespiration.

Pathway	Examples	How it works	Where it wins
C3	Rice, wheat, soybeans	Standard Calvin cycle in mesophyll cells	Cool, moist climates
C4	Maize, sugarcane, sorghum	Spatial separation: CO₂ pre-fixed in mesophyll, then concentrated in bundle-sheath cells around RuBisCO	Hot climates, high light
CAM	Cacti, pineapples, succulents	Temporal separation: stomata open only at night to fix CO₂; Calvin cycle runs during the day with stomata closed	Arid environments

Photosynthesis vs Cellular Respiration

Photosynthesis and cellular respiration are mirror processes. Photosynthesis builds glucose from CO₂ and water using light energy; cellular respiration breaks glucose back down into CO₂ and water, releasing the stored energy as ATP. Plants do both, animals only do the latter.

$$ \text{Photosynthesis:} \quad 6\,CO_2 + 6\,H_2O + \text{light} \longrightarrow C_6H_{12}O_6 + 6\,O_2 $$

$$ \text{Respiration:} \quad C_6H_{12}O_6 + 6\,O_2 \longrightarrow 6\,CO_2 + 6\,H_2O + \text{ATP} $$

Related study notes: Protein, Carbohydrate, Enzyme, Nucleic Acid.

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